Search for: All records

ABSTRACT Coral reefs are increasingly threatened by disease outbreaks, yet little is known about the genetic mechanisms underlying disease resistance. Since the 1970s, White Band Disease (WBD) has decimated the Caribbean staghorn coralAcropora cervicornis. However, 15% or more of individuals are highly disease‐resistant, and the genes controlling the production of Argonaut proteins, involved in microRNA (miRNA) post‐transcriptional gene silencing, are up‐regulated in WBD‐resistant corals. This suggests that miRNAs may be key regulators of coral immunity. In this study, we conducted an in situ disease transmission experiment with five healthy‐exposed control tanks and five WBD‐exposed tanks, each containing 50A. cervicornisgenotypes, sampled over 7 days and then sequenced miRNAs from 12 replicate genotypes, including 12 WBD‐exposed and 12 healthy‐exposed control fragments from two time points. We identified 67bona fidemiRNAs inA. cervicornis, 3 of which are differentially expressed in disease‐resistant corals. We performed a phylogenetic comparison of miRNAs across cnidarians and found greater conservation of miRNAs in more closely related taxa, including all three differentially expressed miRNAs being conserved in more than oneAcroporacoral. One of the three miRNAs has putative genomic targets involved in the cnidarian innate immunity. In addition, community detection coupled with over‐representation analysis of our miRNA–messenger RNA (mRNA) target network found two key uniqueA. cervicornismiRNAs regulating multiple important immune‐related pathways such as Toll‐like receptor pathway, endocytosis, and apoptosis. These findings highlight how multiple miRNAs may help the coral host maintain immune homeostasis in the presence of environmental stress including disease. 

Abstract The National Ecological Observatory Network (NEON) provides over 180 distinct data products from 81 sites (47 terrestrial and 34 freshwater aquatic sites) within the United States and Puerto Rico. These data products include both field and remote sensing data collected using standardized protocols and sampling schema, with centralized quality assurance and quality control (QA/QC) provided by NEON staff. Such breadth of data creates opportunities for the research community to extend basic and applied research while also extending the impact and reach of NEON data through the creation of derived data products—higher level data products derived by the user community from NEON data. Derived data products are curated, documented, reproducibly‐generated datasets created by applying various processing steps to one or more lower level data products—including interpolation, extrapolation, integration, statistical analysis, modeling, or transformations. Derived data products directly benefit the research community and increase the impact of NEON data by broadening the size and diversity of the user base, decreasing the time and effort needed for working with NEON data, providing primary research foci through the development via the derivation process, and helping users address multidisciplinary questions. Creating derived data products also promotes personal career advancement to those involved through publications, citations, and future grant proposals. However, the creation of derived data products is a nontrivial task. Here we provide an overview of the process of creating derived data products while outlining the advantages, challenges, and major considerations. 

This chapter documents the primary shipboard procedures and methods employed by various operational and scientific groups during the offshore and onshore phases of International Ocean Discovery Program (IODP) Expedition 389. Methods for postexpedition research conducted on Expedition 389 samples and data will be described in individual scientific contributions to be published after the Onshore Science Party (OSP). Detailed drilling and engineering operations are described in Operations in each site chapter. 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025). Summary operational information for Holes M0096A–M0096F is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all Expedition 389 sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Site M0101 is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

Our understanding of the mechanisms controlling eustatic sea level and global climate changes has been hampered by a lack of appropriate fossil coral records over the last 500 ky, particularly into and out of the glacial periods. This problem was addressed by International Ocean Discovery Program Expedition 389, which drilled a unique succession of Hawaiian drowned coral reefs now at 110–1300 meters below sea level (mbsl). The four objectives are to investigate (1) the timing, rate, and amplitude of sea level variability to examine cryosphere and geophysical processes, including the assessment of abrupt sea level change events; (2) the processes that determine changes in mean and high-frequency (seasonal–interannual) climate variability from times with different boundary conditions (e.g., ice sheet size, pCO2, and solar forcing); (3) the response of coral reef systems to abrupt sea level and climate changes; and (4) the variations through space and time of the subsidence and the volcanic evolution of the island. To achieve these objectives, 35 holes at 16 sites in water depths ranging 131.9–1241.8 mbsl were drilled during the expedition. A total of 425 m of core was recovered, comprising reef (83%) and volcanic (17%) material. Average core recoveries were 66%, with recoveries >90% in numerous intervals characterized by very well preserved coralgal and microbialite frameworks. Some science-critical shallow sites were not drilled due to a failure to secure permits to operate in Hawaiian state waters. Furthermore, apart from one site, the target penetration depths were not achieved. Preliminary radiometric dates indicate that the recovered reef deposits are from 488 to 13 ka in age. The Onshore Science Party took place in February 2024. Cores were computed tomography (CT) scanned and then opened and hyperspectral scanned and described. Standard measurements were made, and samples were taken for postcruise research. Preliminary assessment of the age and quality of the reef and volcanic cores suggest that many of the expedition objectives will be met. 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Holes M0097A–M0097D is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all Expedition 389 sites, dynamic positioning (DP) was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Site M0100 is provided in Table T1. All times stated are in Hawaiian Standard Time (HST). 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Hole M0098A is provided in Table T1. All times stated are in Hawaii Standard Time (HST). 

The multipurpose vessel MMA Valour was used as the drilling platform throughout Expedition 389. At all Expedition 389 sites, dynamic positioning was used to provide accurate positions throughout operations and water depth was established using a Sound Velocity Profiler (SVP) placed on the top of the PROD5 drilling system. For more detail on acquisition methods, see Introduction in the Expedition 389 methods chapter (Webster et al., 2025a). Summary operational information for Hole M0103A is provided in Table T1. All times stated are in Hawaiian Standard Time (HST).